Ruprecht-Karls-Universität Heidelberg

Software:

FastQC
A quality control tool for high throughput sequence data
http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
Tophat
Fast splice junction mapper for RNA-Seq reads
http://ccb.jhu.edu/software/tophat/index.shtml
IGV

High-performance visualization tool for interactive exploration of large, integrated genomic datasets
http://www.broadinstitute.org/igv/

HTSeq

Python package providing infrastructure to process data from high-throughput sequencing assays
http://www.huber.embl.de/users/anders/HTSeq/doc/overview.html
R

Free programming language and software environment with focus on statistical computing
http://cran.r-project.org/

Bioconductor
R packages for analysis of genomic data
http://bioconductor.org/
Biopython
Tools for biological computation written in Python
www.biopython.org/
Venny

Interactive tool for comparing lists with Venn Diagrams up to 4 lists
http://bioinfogp.cnb.csic.es/tools/venny/

Revigo Reducing and visualizing Gene Ontology http://revigo.irb.hr/








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