MP      MP/MG   MG/MP   MG      
                 (677)   (458)   (458)   (468)
AmAcid Codon /1000 /1000 /1000 /1000 Ala GCA 13.76 13.80 21.47 21.37 Ala GCC 16.50 16.98 4.16 4.14 Ala GCG 11.05 11.45 2.63 2.66 Ala GCT 25.20 25.57 27.53 27.44 Arg AGA 4.02 3.11 14.11 14.01 Arg AGG 2.84 2.50 4.61 4.60 Arg CGA 2.48 2.14 1.34 1.34 Arg CGC 10.72 11.87 3.03 3.03 Arg CGG 5.00 5.40 1.01 1.03 Arg CGT 9.68 10.59 6.93 6.94 Asn AAC 37.01 37.76 29.18 28.94 Asn AAT 25.09 22.46 46.01 45.95 Asp GAC 19.16 19.54 6.88 6.84 Asp GAT 30.40 28.94 42.33 42.30 Cys TGC 2.09 2.15 1.64 1.64 Cys TGT 5.39 5.87 6.60 6.57 Gln CAA 37.90 37.64 38.36 38.33 Gln CAG 15.65 16.44 8.96 8.87 Glu GAA 42.01 42.14 45.56 45.54 Glu GAG 14.71 15.50 11.20 11.15 Gly GGA 6.38 5.55 11.49 11.47 Gly GGC 11.81 10.59 4.98 4.96 Gly GGG 8.95 8.94 6.78 6.78 Gly GGT 27.90 27.48 23.02 22.92 His CAC 11.86 13.39 5.47 5.48 His CAT 6.17 6.23 10.33 10.28 Ile ATA 5.46 4.64 12.60 12.65 Ile ATC 14.39 15.06 17.95 17.91 Ile ATT 45.99 49.31 51.75 51.63 Leu CTA 10.62 11.16 12.71 12.65 Leu CTC 12.23 12.94 5.01 4.99 Leu CTG 9.54 10.26 4.44 4.40 Leu CTT 10.06 8.99 19.93 19.91 Leu TTA 39.24 41.06 50.27 50.12 Leu TTG 21.48 22.05 14.25 14.18 Lys AAA 46.27 43.46 70.55 70.42 Lys AAG 39.08 40.70 24.41 24.39 Met ATG 15.60 16.51 15.21 15.22 Phe TTC 12.75 12.21 8.16 8.19 Phe TTT 43.03 43.45 52.88 52.56 Pro CCA 10.86 10.89 10.84 10.82 Pro CCC 9.05 9.31 3.60 3.58 Pro CCG 6.65 6.67 0.95 0.93 Pro CCT 8.30 7.92 14.57 14.54 Ser AGC 10.62 10.17 6.66 6.66 Ser AGT 21.04 19.60 25.88 25.70 Ser TCA 8.74 7.61 16.41 16.36 Ser TCC 9.59 9.19 3.98 3.99 Ser TCG 6.43 6.22 1.13 1.11 Ser TCT 8.16 6.52 12.41 12.40 Thr ACA 10.38 9.45 16.68 16.60 Thr ACC 21.92 21.99 10.34 10.28 Thr ACG 7.90 7.97 1.64 1.62 Thr ACT 19.32 17.81 25.49 25.36 Trp TGA 6.06 5.09 6.33 6.26 Trp TGG 5.82 5.22 3.46 3.40 Tyr TAC 17.94 18.62 8.36 8.32 Tyr TAT 14.26 13.63 24.02 23.96 Val GTA 13.73 14.67 13.15 13.05 Val GTC 11.03 12.10 3.44 3.40 Val GTG 18.73 20.13 7.08 7.06 Val GTT 21.17 20.72 37.86 37.74 Stop TAA 2.05 1.96 * * Stop TAG 0.78 0.71 * *

Legend: Codon usage of M.pneumoniae (MP) and M.genitalium (MG)

All values are calculated in thousand. The "MP/MG" column contains the 452 M.pneumoniae ORFs with similarity to M.genitalium and the "MG/MG" column represents the codon usage of the M.genitalium ORFs with similarity to M.pneumoniae. We compaire here only ORFs with idenitical annotation. *: the stop codons are not included in the calculation.