Classification of Mycoplasma pneumoniae specific ORFs (128)

M. pneumoniae specific ORFs with homology to functional asigned ORFs: 25

                                                                                                            
No.     ORF-Name            Annotation / Family                                                         
                                                                                                      
532     H10_orf198          arginine deiminase (arcA); MYCCA                                 
533     H10_orf238          arginine deiminase (arcA); MYCCA                                 
282     H03_orf438          arginine deiminase (arcA); PSEPU                                   
531     H10_orf273o         ornithine caramoyl transferase (otc1); ECOLI              
530     F10_orf309          carbamate kinase (EC 2.7.2.2) (arcC); PSEAE                    
278     H03_orf351          NADP-dependent alcohol dehydrogenase (adh); THEBR                     
344     P02_orf242          L-ribulose-5-phosphate 4-epimerase (araD); ECOLI                            
041     C09_orf600          carnitine palmitoyltransferase II precursor(cpt2); HUMAN             
189     E09_orf143V         PTS system mannitol-specific component IIA (EIIA-MTL)(mtlF); STRMU              
190     E09_orf364          mannitol-1-phosphate 5-dehyrogenase (EC 1.1.1.17)(mtlD); STRMU
191     E09_orf379          PTS system mannitol-specific component IIA (EIIA-MTL)(mtlA); ECOLI              
347     P02_orf159          hypothetical phosphotransferase protein (yjfU) homolog; ECOLI   
503     F10_orf326          protein (bcrA) homolog; BACLI                                                   
551     A65_orf306          protein (prrB) homolog, ECOLI                                                   
227     C12_orf249          restriction-modification enzyme subunit S1B (hsdS); MYCPU           
066     R02_orf335          type I restriction enzyme ecokI specificity protein (hsdS) homolog; HAEIN       
472     H91_orf268          type I restriction enzyme ecokI specificity protein (hsdS) homolog; HAEIN       
490     H91_orf376          Type 1 restriction enzyme (hsdR) homolog; ECOLI                                 
492     H91_orf206          Type 1 restriction enzyme (hsdR) homolog; ECOLI                                 
494     H91_orf330          type I restriction enzyme ecokI specificity protein (hsdS) homolog; HAEIN       
495     H91_orf543          type I restriction enzyme (hsdM); ECOLI                                         
631     GT9_orf238          type I restriction enzyme ecokI specificity protein (hsdS) homolog; HAEIN       
335     P02_orf363V         type I restriction enzyme ecokI specificity protein (hsdS) homolog; HAEIN       
546     H10_orf145L         type I restriction enzyme ecokI specificity protein (hsdS) homolog; HAEIN       
547     H10_orf187V         HsdS1B protein homolog; MYCPU                                                   
                                                                                                            

M. pneumoniae specific ORFs with homology to hypothetical and/or expressed asgined ORFs: 7

                                                                                                            
187     E09_orf204o         protein P30, MYCPN                                                            
346     P02_orf660          hypothetical protein (yjfS) homolog; ECOLI                  
348     P02_orf218          hypothetical protein (yjfV) homolog; ECOLI                  
349     P02_orf305          hypothetical protein (yjfW) homolog; ECOLI                 
358     P01_orf341          hypothetical protein (yibD) homolog; ECOLI                 
416     A05_orf102          hypothetical 13.2 KD protein homolog (ylxM); BACSU 
010     E07_orf179          expressed                                                                       

M. pneumoniae specific ORFs with pattern based homology and/or paralogy: 29

                                                                                                            
100     D09_orf123          putative lipoprotein                          
143     D12_orf231          putative lipoprotein                          
188     E09_orf129          putative lipoprotein                          
192     E09_orf101          putative lipoprotein                          
373     P01_orf101          putative lipoprotein                          
468     H91_orf253          putative lipoprotein                          
504     F10_orf750          putative ABC transport permease   
461     A19_orf1140         A19_orf1140 Fam SG2                       
462     A19_orf129          A19_orf1140 Fam SG2                        
464     A19_orf204          A19_orf1140 Fam SG2                        
043     C09_orf130b         C09_orf130b Fam                               
044     C09_orf422          C09_orf404 Fam                                   
047     C09_orf404          C09_orf404 Fam                                   
207     E30_orf352          E30_orf352 Fam                                   
209     C12_orf247          E30_orf352 Fam                                   
208     C12_orf181o         E30_orf352 Fam                                  
502     F10_orf741          F10_orf750 Fam                                   
007     E07_orf140          Lipo Fam SG5                                       
193     E09_orf136L         Lipo Fam SG5                                      
337     P02_orf253          Lipo Fam SG5                                       
374     P01_orf140          Lipo Fam SG5                                       
142     D12_orf235          Lipo Fam SG5                                       
065     R02_orf329          R02_orf150 Fam                                  
068     R02_orf150          R02_orf150 Fam                                  
069     R02_orf105          R02_orf150 Fam                                  
070     R02_orf440          R02_orf150 Fam                                  
059     R02_orf264          R02_orf254 Fam                                  
060     R02_orf254          R02_orf254 Fam                                  
529     F10_orf565          R02_orf254 Fam                                  
                                                                                                            

M. pneumoniae specific ORFs with homology to repetitve DNA elments derived ORFs: 30

                                                                                                            
016     E07_orf163          -                                                                         
017     E07_orf166          -                                                                         
018     E07_orf228          -                                                                         
025     C09_orf140o         -                                                                        
026     C09_orf149b         adhesin P1 (group 2) homolog; MYCPN    
027     C09_orf149a         -                                                                        
028     C09_orf180          -                                                                         
055     R02_orf183o         -                                                                       
061     R02_orf140          -                                                                        
062     R02_orf301          hypothetical 130K protein homolog (orf6, P1 operon); MYCPN   
064     R02_orf138          -                                                                               
117     B01_orf147          -                                                                               
167     K05_orf101a         -                                                                               
318     G12_orf168          -                                                                               
338     P02_orf126          -                                                                               
341     P02_orf196          -                                                                               
357     P02_orf103b         -                                                                               
375     P01_orf199          -                                                                               
377     H08_orf157a         -                                                                               
426     A05_orf139          -                                                                               
429     F11_orf148o         -                                                                               
469     H91_orf180          -                                                                               
549     A65_orf118          -                                                                               
553     A65_orf115          -                                                                               
629     GT9_orf127          ADP1_MYCPN adhesin P1 precursor homolog; MYCPN  
004     E07_orf133          REP Fam SG1B                                 
116     B01_orf116L         REP Fam SG1B                               
141     D12_orf257          REP Fam SG1B                                 
144     D12_orf131          REP Fam SG1B                                 
493     H91_orf216          REP Fam SG1B                                
                                                                                                   

M. pneumoniae specific ORFs with no homology: 37

                                                                                                   
012     E07_orf175                                                                    
042     C09_orf223                                                                    
045     C09_orf718                                                                    
046     C09_orf165                                                                    
048     C09_orf251                                                                    
052     C09_orf172                                                                    
067     R02_orf101                                                                   
085     D09_orf127a                                                                  
114     B01_orf103b                                                                 
127     B01_orf274                                                                    
155     K05_orf250                                                                   
166     K05_orf106                                                                   
248     D02_orf122a                                                                  
249     D02_orf122b                                                                 
263     D02_orf109                                                                    
264     D02_orf100                                                                    
267     D02_orf128                                                                    
277     H03_orf152                                                                   
308     G12_orf140b                                                                 
315     G12_orf225                                                                    
328     F04_orf120                                                                    
329     F04_orf150                                                                    
343     P02_orf163                                                                    
345     P02_orf143                                                                    
350     P02_orf474                                                                    
355     P02_orf147                                                                    
371     P01_orf243                                                                    
399     H08_orf102                                                                   
432     F11_orf879                                                                    
465     A19_orf591                                                                   
491     H91_orf115                                                                   
525     F10_orf218                                                                    
539     H10_orf119                                                                   
541     H10_orf220L                                                                 
542     H10_orf206                                                                   
626     GT9_orf113                                                                    
669     VXpSPT7_orf112


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