All ORFs were scanned for putative transmembrane domains with the program TopPredII 1.1.1
by M-G Carlos, Ecole Normale Superieure; Laboratoire de Genetique Moleculare, Paris, France.
This program is based on an algorithm of Gunnar von Heijne. The Numbers at the end of the rows
indicate the amount of transmembrane domains which were proposed by the program with "certain".
A05_orf1244         putative lipoprotein, MG307 homolog, MYCGE                                   1  
A05_orf252          putative lipoprotein, MG440 homolog, MYCGE                                   1  
A05_orf278          ADP1_MYCPN adhesin P1 precursor homolog; MYCPN                               1  
A05_orf317          MG302 homolog, MYCGE                                                         5  
A05_orf395          MG306 homolog, MYCGE                                                         7  
A05_orf409          phosphoglycerate kinase (pgk); THEMA                                         1  
A05_orf475          MG294 homolog, MYCGE                                                        12  
A05_orf542          transport system permease protein P69; MYCHR                                10  
A05_orf982          P115 protein homolog (SGC3); MYCHR                                           1  
A19_orf1140         -                                                                            2  
A19_orf204          -                                                                            1  
A19_orf737V         ADP1_MYCPN adhesin P1 precursor homolog; MYCPN                               4  
A19_orf872          DNA polymerase III alpha subunit (dnaE); HAEIN                               1  
A65_orf117          MG129 homolog, MYCGE                                                         1  
A65_orf227          phosphatidylglycerophosphate synthase (pgsA); HAEIN                          5  
A65_orf251a         putative lipoprotein, MG440 homolog, MYCGE                                   1  
A65_orf266          MG133 homolog, MYCGE                                                         4  
A65_orf285          MG135 homolog, MYCGE                                                         7  
A65_orf311          high affinity ribose transport protein (rbsC); HAEIN                         9  
A65_orf338          UDP-glucose 4-epimerase (galE); STRTR                                        2  
A65_orf465V         adhesin P1 (group 2) homolog; MYCPN                                          1  
A65_orf475          MG123 homolog, MYCGE                                                         1  
A65_orf489          lysyl-tRNA synthetase (lysS); BACSU                                          1  
A65_orf493          hypothetical protein Ysr1 homolog; MYCMY                                     1  
A65_orf517          MG120 homolog, MYCGE                                                        10  
A65_orf787o         putative lipoprotein, MG260 homolog, MYCGE                                   2  
A65_orf794          putative lipoprotein, MG260 homolog, MYCGE                                   1  
B01_orf103b         -                                                                            1  
B01_orf1443         DNA polymerase III (dnaE) alpha chain (3'-5' exonuclease); BACSU             1  
B01_orf147          -                                                                            3  
B01_orf168          MG027 homolog, MYCGE                                                         1  
B01_orf178          uracil phosphoribosyltransferase (upp); STRSL                                1  
B01_orf203          MG028 homolog, MYCGE                                                         4  
B01_orf264          glycerol uptake facilitator (glpF); BACSU                                    6  
B01_orf274          -                                                                            1  
B01_orf299V         trsB protein; YEREN                                                          2  
B01_orf309          proline iminopeptidase (pip); NEIGO                                          1  
B01_orf338          MG032 homolog, MYCGE                                                         1  
B01_orf414o         histidyl-tRNA synthetase (hisS); STREQ                                       1  
B01_orf512          methionyl-tRNA synthetase (metS); BACST                                      1  
B01_orf666          MG032 homolog, MYCGE                                                         1  
B01_orf672          MG032 homolog, MYCGE                                                         1  
B01_orf673          MG032 homolog, MYCGE                                                         1  
C09_orf130b         -                                                                            3  
C09_orf149a         -                                                                            3  
C09_orf172          -                                                                            1  
C09_orf223          -                                                                            5  
C09_orf789          topoisomerase IV subunit A (parC), BACSU                                     1  
C12_orf141          MG427 homolog, MYCGE                                                         1  
C12_orf157L         ATP synthase protein I (atpI); MYCGA                                         4  
C12_orf235          uridylate kinase (pyrH); ECOLI                                               1  
C12_orf293o         ATP synthase A chain (atpB); MYCGA                                           6  
C12_orf334          MG413 homolog, MYCGE                                                         1  
C12_orf344          MG415 homolog, MYCGE                                                         1  
C12_orf385          MG412 homolog, MYCGE                                                         1  
C12_orf404          hypothetical protein (yfiB) homolog; SPICI                                   6  
C12_orf450          ATP-dependent RNA helicase (deaD); HAEIN                                        
C12_orf561          MG423 homolog, MYCGE                                                         2  
C12_orf651V         phosphate transport system permease protein PstA; ECOLI                     12  
C12_orf997          MG414 homolog, MYCGE                                                         1  
D02_orf100          -                                                                            2  
D02_orf105          ATP synthase C chain (atpE); MYCGA                                           2  
D02_orf109          -                                                                            2  
D02_orf122a         -                                                                            2  
D02_orf122b         -                                                                            2  
D02_orf128          -                                                                            2  
D02_orf129          MG389 homolog, MYCGE                                                         1  
D02_orf150          MG068 homolog, MYCGE                                                         1  
D02_orf152          galactose-6-phosphate isomerase subunit (LacA); STRMU                        1  
D02_orf207          ATP synthase B chain (atpF); MYCGA                                           2  
D02_orf217L         putative lipoprotein, MG395 homolog, MYCGE                                   1  
D02_orf302          putative lipoprotein, MG068 homolog, MYCGE                                   1  
D02_orf439          putative lipoprotein, MG068 homolog, MYCGE                                   1  
D02_orf445          nonspecified aminopeptidase; MYCSA                                           1  
D02_orf518          ATP synthase alpha chain (atpA); MYCGA                                       1  
D02_orf521          putative lipoprotein, MG395 homolog, MYCGE                                   1  
D02_orf531          putative lipoprotein, MG395 homolog, MYCGE                                   1  
D02_orf569          MG397 homolog, MYCGE                                                         1  
D02_orf660          lactococcin transport ATP-binding protein (lcnDR3); LACLA                    6  
D09_orf123          putative lipoprotein                                                         1  
D09_orf125          MG055 homolog, MYCGE                                                         1  
D09_orf127a         -                                                                            2  
D09_orf238          purine-nucleoside phosphorylase (deoD); ECOLI                                1  
D09_orf276          hypothetical protein YabC homolog; BACSU                                     1  
D09_orf286a         spermidine/putrescine transport system permease (PotI); ECOLI                6  
D09_orf286b         spermidine/putrescine transport system permease (potB); HAEIN                6  
D09_orf319          o-sialoglycoprotein endopeptidase (gcp); PASHA                               1  
D09_orf384          aerobic glycerol-3-phospate dehydrogenase (GLPD); ECOLI                      1  
D09_orf485          putative lipoprotein, MG045 homolog, MYCGE                                   1  
D09_orf508          glycerol kinase (glpK), HAEIN                                                1  
D09_orf632          MG288 homolog, MYCGE                                                         1  
D09_orf657          putative lipoprotein, MG040 homolog, MYCGE                                   2  
D12_orf231          putative lipoprotein                                                         1  
D12_orf235          -                                                                            1  
D12_orf269          5,10-methylene-tetrahydrofolate dehydrogenase (mtd1); HAEIN                  2  
D12_orf623          transport ATP-binding protein Pmd1; SCHPO                                    6  
D12_orf634          transport ATP-binding protein (msbA); HAEIN                                  6  
E07_orf1218         hypothetical 130K protein (orf6; P1 operon); MYCPN                           4  
E07_orf1627         adhesin P1 (orf5, P1 operon); MYCPN                                          5  
E07_orf301          putative lipoprotein, MG186 homolog, MYCGE                                   1  
E07_orf319          sn-glycerol-3-phosphate transport system permease protein UgpE; ECOLI        6  
E07_orf329          sn-glycerol-3-phosphate transport system permease protein UgpA; ECOLI        6  
E07_orf413          ADP1_MYCPN adhesin P1 precursor homolog; MYCPN                               2  
E07_orf586          sn-glycerol-3-phosphate transport system permease protein UgpC; ECOLI        1  
E07_orf794          putative lipoprotein, MG260 homolog, MYCGE                                   2  
E09_orf101          putative lipoprotein                                                         1  
E09_orf129          putative lipoprotein                                                         1  
E09_orf136          MG441 homolog, MYCGE                                                         1  
E09_orf276          putative lipoprotein, MG440 homolog, MYCGE                                   1  
E09_orf277          putative lipoprotein, MG440 homolog, MYCGE                                   1  
E09_orf279          putative lipoprotein, MG439 homolog, MYCGE                                   1  
E09_orf283a         putative lipoprotein, MG439 homolog, MYCGE                                   1  
E09_orf283b         putative lipoprotein, MG439 homolog, MYCGE                                   1  
E09_orf287o         MG439 homolog, MYCGE                                                         1  
E09_orf290          putative lipoprotein, MG439 homolog, MYCGE                                   1  
E09_orf300          putative lipoprotein, MG439 homolog, MYCGE                                   2  
E09_orf302          MG440 homolog, MYCGE                                                         1  
E09_orf379          PTS system mannitol-specific component IIA (EIIA-MTL)(mtlA); ECOLI           7  
E30_orf395          CDP-diglyceride synthetase (cdsA); HAEIN                                    10  
F10_orf100a         hypothetical protein YsxB homolog; BACSU                                     1  
F10_orf328          thymidylate synthase (thyA); STAAU                                           1  
F10_orf339          ribonucleotide reductase 2 (nrdF); SALTY                                     1  
F10_orf491          hypothetical protein homolog (put. amino acid permease); CLOPE              12  
F10_orf503          general amino acid permease GAP1 homolog; YEAST                             12  
F10_orf565          -                                                                           12  
F10_orf621          MG241 homolog, MYCGE                                                         2  
F10_orf632o         MG242 homolog, MYCGE                                                         3  
F10_orf721          ribonucleoside-diphosphate reductase (nrdE); SALTY                           1  
F10_orf741          -                                                                            7  
F10_orf750          -                                                                            6  
F10_orf795          ATP-dependent protease (lon); BACSU                                          1  
F10_orf90           MG220 homolog, MYCGE                                                         1  
F11_orf114          MG267 homolog, MYCGE                                                         2  
F11_orf197          MG286 homolog, MYCGE                                                         1  
F11_orf218          MG279 homolog, MYCGE                                                         2  
F11_orf287          MG280 homolog, MYCGE                                                         2  
F11_orf327          pyruvate dehydrogenase E1-beta subunit (pdhB); ACHLA                         2  
F11_orf402          dihydrolipoamide acetyltransferase component (E2) (pdhC); ACHLA              1  
F11_orf457          dihydrolipoamide dehydrogenase (pdhD); BACST                                 2  
F11_orf479          NADH oxidase (nox); ENTFA                                                    2  
F11_orf533L         ADP1_MYCPN adhesin P1 precursor homolog; MYCPN                               2  
F11_orf582          MG281 homolog, MYCGE                                                         1  
F11_orf760          putative lipoprotein, MG260 homolog, MYCGE                                   2  
F11_orf793o         leucyl-tRNA synthetase (leuS); BACSU                                         3  
F11_orf879          -                                                                            1  
F11_orf887          MG277 homolog, MYCGE                                                        11  
G07_orf1030         protein P100; MYCPN                                                          1  
G07_orf135          MG074 homolog, MYCGE                                                         1  
G07_orf138          MG076 homolog, MYCGE                                                         3  
G07_orf312          MG085 homolog, MYCGE                                                         2  
G07_orf376          oligopeptide transport system permease protein (amiD); STRPN                 6  
G07_orf389a         oligopeptide transport system permease protein (oppB); BACSU                 6  
G07_orf389b         prolipoprotein diacylglyceryl transferase (lgt); ECOLI                       8  
G07_orf417          MG288 homolog, MYCGE                                                         1  
G07_orf423          oligopeptide transport ATP-binding protein (oppD); BACSU                     1  
G07_orf454          putative lipoprotein, MG095 homolog, MYCGE                                   1  
G07_orf479          MG098 homolog, MYCGE                                                         8  
G07_orf872V         MG(2+) TRANSPORT ATPASE, P-TYPE 1 (mgtA); ECOLI                             11  
G12_orf122          ribosomal protein L7/L12 ('A' type) (rpL7/L12); MICLU                        1  
G12_orf136          MG354 homolog, MYCGE                                                         1  
G12_orf218          MG364 homolog, MYCGE                                                         1  
G12_orf225          -                                                                            5  
G12_orf272V         triacylglycerol lipase (lip) 3; MYCMY                                        1  
G12_orf282b         LicA protein homolog; HAEIN                                                  1  
G12_orf305          putative lipoprotein, MG348 homolog, MYCGE                                   1  
G12_orf311          methionyl-tRNA formyltransferase (fmt); ECOLI                                1  
G12_orf325          hypothetical 28K protein (P1 operon) homolog; MYCPN                          1  
G12_orf387          MG372 homolog, MYCGE                                                         1  
G12_orf564          threonyl-tRNA synthetase (thrSv); BACSU                                      1  
G12_orf861          isoleucine-tRNA ligase (ileS); STAAU                                         2  
GT9_orf127          ADP1_MYCPN adhesin P1 precursor homolog; MYCPN                               1  
GT9_orf313          ADP1_MYCPN adhesin P1 precursor homolog; MYCPN                               1  
GT9_orf319V         adenine-specific methyltransferase EcoRI (mte1); ECOLI                       1  
GT9_orf327          RNA polymerase alpha core subunit (rpoA); BACSU                              1  
GT9_orf434          MG181 homolog, MYCGE                                                         5  
GT9_orf477          preprotein translocase secY subunit; MYCCA                                  10  
GT9_orf760          putative lipoprotein, MG185 homolog, MYCGE                                   1  
GT9_orf798          putative lipoprotein, MG260 homolog, MYCGE                                   1  
GT9_orf940o         PTS system, glucose-specific IIABC component (EIIABC-GLC); BACSU            10  
H03_orf152          -                                                                            3  
H03_orf351          NADP-dependent alcohol dehydrogenase (adh); THEBR                            1  
H08_orf1005         putative lipoprotein, MG321 homolog, MYCGE                                   3  
H08_orf102          -                                                                            2  
H08_orf1325         putative lipoprotein, MG309 homolog, MYCGE                                   1  
H08_orf150          putative lipoprotein, MG307 homolog, MYCGE                                   1  
H08_orf193          MG319 homolog, MYCGE                                                         2  
H08_orf237          putative lipoprotein, MG307 homolog, MYCGE                                   1  
H08_orf263          MG313 homolog, MYCGE                                                         6  
H08_orf270          ADP1_MYCPN adhesin P1 precursor homolog; MYCPN                               1  
H08_orf274          30K adhesin-related protein; MYCPN                                           2  
H08_orf287          (cytochrome C oxidase polypeptide I (CtaD); BACSU)                           7  
H08_orf289          triacylglycerol lipase (lip) 3; Mycoplasma sp                                1  
H08_orf314          MG315 homolog, MYCGE                                                         1  
H08_orf369          (competence locus E (comE3); BACSU)                                         10  
H08_orf445          hypothetical 130K protein homolog (orf6, P1 operon); MYCPN                   1  
H08_orf448          MG314 homolog, MYCGE                                                         4  
H08_orf565          Na(+) translocating ATPase subunit J (ntpJ); ENTHR                          10  
H08_orf591          MG321 homolog, MYCGE                                                         3  
H08_orf726          MG307 homolog, MYCGE                                                         1  
H10_orf184          prolipoprotein signal peptidase (lsp); STACA                                 3  
H10_orf208          hypothetical protein P35155 homolog; BACSU                                   1  
H10_orf238          arginine deiminase (arcA); MYCCA                                             1  
H10_orf266          1-acyl-sn-glycerol-3-phosphate acyltransferase (slc1); YEAST               2  
H10_orf273o         ornithine caramoyl transferase (otc1); ECOLI                                 1  
H10_orf506          dihyrofolate reductase (DYR) homolog protein; ENTFC                          1  
H91_orf102          putative lipoprotein, MG260 homolog, MYCGE                                   1  
H91_orf224          MG243 homolog, MYCGE                                                         4  
H91_orf239          hypothetical protein YgiH homolog; ECOLI                                     6  
H91_orf253          putative lipoprotein                                                         1  
H91_orf258          MG256 homolog, MYCGE                                                         3  
H91_orf529          DNA helicase pcrA homolog; STAAU                                             1  
H91_orf534          MG255 homolog, MYCGE                                                         2  
H91_orf543          type I restriction enzyme (hsdM); ECOLI                                      1  
H91_orf620          DNA primase (dnaG); BACSU                                                    1  
H91_orf677          MG260 homolog, MYCGE                                                         1  
K04_orf202          MG105 homolog, MYCGE                                                         1  
K04_orf239          5'guanylate kinase (gmk); HAEIN                                              1  
K04_orf315          thioredoxin reductase (trxB); EUBAC                                          1  
K04_orf389          probable protein serine/threonine kinase; CAEEL                              1  
K04_orf430          phosphoglucose isomerase B (pgiB); BACST                                     1  
K04_orf455o         asparaginyl-tRNA synthetase (asnS); ECOLI                                    1  
K04_orf726          virulence associated protein homolog (vacB); HAEIN                           1  
K05_orf1882         -                                                                            9  
K05_orf251          MG452 homolog, MYCGE                                                         5  
K05_orf270          soj homolog protein; BACSU                                                   1  
K05_orf312          L-lactate dehydrogenase (ldh); MYCHY                                         1  
K05_orf345          MG456 homolog, MYCGE                                                         2  
K05_orf385          hypothetical protein 1 (S42122); MYCCA                                       6  
K05_orf399          tyrosyl tRNA synthetase (tyrS); BACCA                                        1  
K05_orf401          hypothetical protein (P27712); SPICI                                         6  
K05_orf499          MG447 homolog, MYCGE                                                        10  
K05_orf709          cell division protein (ftsH); BACSU                                          2  
K05_orf839o         DNA gyrase subunit A (gyrA); STAAU                                           1  
P01_orf101          putative lipoprotein                                                         1  
P01_orf197          hypothetical protein HI1366 homolog; HAEIN                                   1  
P01_orf199          -                                                                            4  
P01_orf209          MG331 homolog, MYCGE                                                         1  
P01_orf243          -                                                                            4  
P01_orf268          triacylglycerol lipase (lip) 2; MYCMY                                        1  
P01_orf292          hypothetical protein HI0136 (era like) homolog; HAEIN                        1  
P01_orf293          degV homolog protein; BACSU                                                  1  
P01_orf838          valyl-tRNA synthetase (valS); BACST                                          1  
P02_orf1300         putative lipoprotein, MG338 homolog, MYCGE                                   2  
P02_orf143          -                                                                            1  
P02_orf147          -                                                                            1  
P02_orf253          -                                                                            1  
P02_orf458          MG096 homolog, MYCGE                                                         1  
P02_orf474          -                                                                            1  
P02_orf509          MG288 homolog, MYCGE                                                         1  
P02_orf527V         ADP1_MYCPN adhesin P1 precursor homolog; MYCPN                               2  
P02_orf660          hypothetical protein YjfS homolog; ECOLI                                    12  
P02_orf793          putative lipoprotein, MG260 homolog, MYCGE                                   2  
R02_orf105          -                                                                            2  
R02_orf1386V        MG064 homolog, MYCGE                                                         8  
R02_orf150          -                                                                            3  
R02_orf254          -                                                                            6  
R02_orf264          -                                                                            6  
R02_orf300          1-phosphofructokinase (fruK); HAEIN                                          1  
R02_orf329          -                                                                           7   
R02_orf347L         ADP1_MYCPN adhesin P1 precursor homolog; MYCPN                               2  
R02_orf440          -                                                                            9  
R02_orf469          MG061 homolog, MYCGE                                                        10  
R02_orf524          MG068 homolog, MYCGE                                                         1  
R02_orf533          putative lipoprotein, MG067 homolog, MYCGE                                   1  
R02_orf541          putative lipoprotein, MG260 homolog, MYCGE                                   1  
R02_orf564o         hexosephosphate transport protein (uhpT); SALTY                             12  
R02_orf648          transketolase 1 (TK 1; tktB); RHOSH                                          3  
R02_orf694          fructose-permease IIBC component (fruA); ECOLI                              11  
VXpSPT7_orf112      -                                                                            2  
VXpSPT7_orf269      hypothetical protein (YaaC) homolog; PSEFL                                   1  
VXpSPT7_orf287b     ribosomal protein L3 (rpL3); MYCCA                                           1  
VXpSPT7_orf320      putative lipoprotein, MG149 homolog, MYCGE                                   1  
VXpSPT7_orf377      MG147 homolog, MYCGE                                                         7  
VXpSPT7_orf402      MG144 homolog, MYCGE                                                         3  
VXpSPT7_orf424      hemolysin (tlyC) homolog protein; HAEIN                                      4

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