TBLASTN 1.3.9 [29-Oct-93]
Reference: Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W. Myers,
and David J. Lipman (1990). Basic local alignment search tool. J. Mol. Biol.
215:403-410.
Notice: statistical significance is estimated under the assumption that the
equivalent of one complete reading frame of the database codes for protein and
that significant alignments will involve only coding reading frames.
Query= K05_orf1882.prot 1882 bases, 9C6FD11C checksum.
(1882 letters)
Database: MGseq
1 sequences; 580,073 total letters.
Searchingdone
Smallest
Poisson
Reading High Probability
Sequences producing High-scoring Segment Pairs: Frame Score P(N) N
Mycoplasma genitalium 580073 bp 10/09/95 +2 1274 0.0 2
>Mycoplasma genitalium 580073 bp 10/09/95
Length = 580,073
Plus Strand HSPs:
Score = 176 (80.1 bits), Expect = 7.1e-17, P = 7.1e-17
Identities = 53/231 (22%), Positives = 103/231 (44%), Frame = +2
Query: 957 AFNVKDISKFQYLTTARNYFPDLVQNYLAIASVVIAAFLSILALYLTILLIKSFIKKNQT 1016
A++ D + L AR F + N + + ++ + + +A+ ++IL++ S++KKN
Sbjct: 75056 AYSSSDTTNILNLLAARTVFIPNLINTINLVALFLTIAILTVAIIVSILILISYLKKNTE 75235
Query: 1017 EFSIIRAGGFSTAKFIAGMSVFAGIVALASSFFGVLFAFLLERQVKGIISRYWFIALPAN 1076
+ I++A G S K + +F I A+ + G F + + S Y FI +
Sbjct: 75236 QIGILKANGLSGKKINLSLLIFGLIPAIVGAISGYSFGIGFQDVAIHLFSNY*FIPTATS 75415
Query: 1077 SFNWISFFGSMLLIFVIFQFISWIAFKQLFSKPVNVLIDQGNETKFSVFLHLLKRKSYTM 1136
SF+ + L + +I IS + + K V ++ +E K S K+
Sbjct: 75416 SFSVVGLLFFSLFVILIMSSISLLVGSIILKKDVVKILKHDSEFKVSRLGLSSKKLFARF 75595
Query: 1137 TPLGKFRVSLIISRLSRLFTYVGLSSIALLLIGIAGTIPQKFGAAQSNTVL 1187
+ +FRV+L + +L +SS ++++ ++ F AQS T L
Sbjct: 75596 GIMTRFRVALAFNAP*KLVFLTLMSSFTMMILNLSFATKDSFENAQSKTNL 75748
Score = 155 (70.5 bits), Expect = 7.3e-28, Poisson P(2) = 7.3e-28
Identities = 31/98 (31%), Positives = 54/98 (55%), Frame = +2
Query: 1751 NTVNQVDGFLLGTIIPFIFITCVVLGISMLEEMKRIFISLKSIGYKDSQNLVSLLCFFIP 1810
NT Q+ ++ IIP I + +++ ++++E+K+I I LK++GY + + L S L +IP
Sbjct: 77279 NTTKQIQAVVIAVIIPIIMLIILLVSTTLIQELKKIAIRLKALGYSNLKILASFLSIYIP 77458
Query: 1811 AFVLSLLISIAILAGLLVGVQALVFGVAQVFLTNVFEF 1848
F LLISI L+ ++F + +FL F
Sbjct: 77459 LFAFGLLISIPFSIYLIALHNEVIFASSSIFLDAFLSF 77572
Score = 110 (50.0 bits), Expect = 1.4e-23, Poisson P(3) = 1.4e-23
Identities = 20/52 (38%), Positives = 34/52 (65%), Frame = +2
Query: 854 LPDKYKFSINGLTFAILGVGESVETGYPVLSTNSPLPNSQDEGLIFLNEQGY 905
+ KYK SI+ + + ++GVG S + YPV S + +PN ++E L ++N+ GY
Sbjct: 74762 IDQKYKISIDNIDYLVIGVGISPDFVYPVFSASLIVPNIENEQLYYVNQTGY 74917
Score = 67 (30.5 bits), Expect = 0.062, P = 0.060
Identities = 17/54 (31%), Positives = 28/54 (51%), Frame = +3
Query: 658 QTDEKKKAAAKTTQGTTDSLTQLADASSSSSSSSTGDTKSTSTKFQIYPKLANI 711
+ + K++ + S + + +SSSSSSS+T T +TST P +NI
Sbjct: 429918 RANSKREEDGDANSPSPSSSSSSSSSSSSSSSSTTTTTTTTSTSSTPLPTFSNI 430079
Score = 59 (26.8 bits), Expect = 0.65, P = 0.48
Identities = 12/26 (46%), Positives = 18/26 (69%), Frame = +1
Query: 69 SPVYKTELKEEKRHFSKIKLTEKKIN 94
SP K + K+HF+ +KLTEK++N
Sbjct: 447799 SPDQKDKKSLFKKHFAYLKLTEKELN 447876
Score = 58 (26.4 bits), Expect = 0.0020, Poisson P(4) = 0.0020
Identities = 13/40 (32%), Positives = 18/40 (45%), Frame = +2
Query: 1180 AAQSNTVLNRNFNYRLNLQTPTEQSGWYAIQPYSRFGQTD 1219
A + N+N Y L + T QSG Q ++ G TD
Sbjct: 75728 AQSKTNLTNQNHQYEFELASATTQSGLLK*QLFAELGTTD 75847
Score = 56 (25.5 bits), Expect = 0.022, Poisson P(4) = 0.021
Identities = 15/52 (28%), Positives = 26/52 (50%), Frame = +3
Query: 1318 NINPWEIVEKSIPKQITQLLSASSDQFLIAVLTDDYFNNLNNNGFLTRNPRT 1369
NIN VEK+I +I + + A + ++ T + + NNN F+ + T
Sbjct: 127923 NINSLNNVEKAIDLEINRQVKALINGETLSQATLSFDDKTNNNVFMRKKDNT 128078
Score = 55 (25.0 bits), Expect = 1.1, Poisson P(2) = 0.66
Identities = 16/67 (23%), Positives = 29/67 (43%), Frame = +3
Query: 489 QTNVALAQQQQDKQESSADDGVKDPTFSDVQTEFDKIGTENHTPQKNLNNVYAALLHQWK 548
+ +A + Q+D Q + Q E DK+ +N+ + L+N + AL +Q +
Sbjct: 261915 ELKIAFSDLQKDYQVFELQKDQEFRQIEAKQRELDKLAEKNNQVKLELDNRFQALQNQKQ 262094
Query: 549 SIFQEDL 555
Q L
Sbjct: 262095 DTVQAQL 262115
Score = 53 (24.1 bits), Expect = 0.17, Poisson P(5) = 0.15
Identities = 11/37 (29%), Positives = 20/37 (54%), Frame = +2
Query: 1401 LTKVYGDPELSYQDSKLTYGIVPVDPQIEETYTYVQG 1437
L+ + D + +++ +K TYGI+ V I Y +G
Sbjct: 194195 LSTLRADIDYAFEKAKTTYGIIGVKVWINRGMIYAKG 194305
Score = 53 (24.1 bits), Expect = 2.3, Poisson P(2) = 0.90
Identities = 16/47 (34%), Positives = 24/47 (51%), Frame = +1
Query: 685 SSSSSSSTGDTKSTSTKFQIYPKLANILAQAQLPEASSIPDTLTNAI 731
+S SS++ ++ T F LAN+LA P+A P T+ AI
Sbjct: 325702 ASKSSTNWSLVSNSQTTFAA*MWLANVLAMVVFPKAIIPPITIQLAI 325842
Score = 52 (23.7 bits), Expect = 0.34, Poisson P(6) = 0.29
Identities = 11/27 (40%), Positives = 15/27 (55%), Frame = +3
Query: 1512 ATRYSEKFLKSPPKTPTVKFRVVGVST 1538
+T+ S K K P T R++GVST
Sbjct: 300531 STKVSTKLAKCPDAFQTNSLRIIGVST 300611
Score = 51 (23.2 bits), Expect = 3.5, Poisson P(2) = 0.97
Identities = 12/25 (48%), Positives = 17/25 (68%), Frame = +3
Query: 555 LVKKVTALLEKYRDAFLKAKALKEL 579
LVK + +L+ Y+ FLKAK L +L
Sbjct: 458769 LVKLLLKILKNYQILFLKAKHLHKL 458843
Score = 50 (22.7 bits), Expect = 2.0, P = 0.86
Identities = 8/15 (53%), Positives = 12/15 (80%), Frame = +1
Query: 1 MFSFFKQIFKSLKKF 15
+FSFFK +F++ K F
Sbjct: 490858 LFSFFKDVFRTQKNF 490902
Score = 50 (22.7 bits), Expect = 3.9, Poisson P(2) = 0.98
Identities = 9/37 (24%), Positives = 19/37 (51%), Frame = +2
Query: 785 PIIFKNGVNPLTLPTDQQSLVVQTPEAHGAVVSQQWL 821
P++++N P+ +D QSL+ T ++W+
Sbjct: 209090 PVVYQNKKYPINSVSDYQSLLENTNRGIRKACYEKWI 209200
Score = 49 (22.3 bits), Expect = 4.0, Poisson P(2) = 0.98
Identities = 11/42 (26%), Positives = 20/42 (47%), Frame = +2
Query: 14 KFFFLLFGIIFVLFSIIFLETSILQLSNNLVNTYTALVQKTN 55
KFF + G IF + I +++ + +N Y + +TN
Sbjct: 572027 KFFRVSCGSIFRFYINIITNINVVSILKTSINNYIHFLIRTN 572152
Minus Strand HSPs:
Score = 1274 (579.5 bits), Expect = 1.5e-167, P = 1.5e-167
Identities = 241/302 (79%), Positives = 272/302 (90%), Frame = -2
Query: 1271 NGKEIELGNLLLPSFGGAQQLNTDENFFRHASLSKWLIDFPIRVGGANINPWEIVEKSIP 1330
+G E+ELGNLLLPS+GGAQQLNTDENFFRHASLSKW+IDFPIRVGG+NINPWEIVEKSIP
Sbjct: 572773 DGTELELGNLLLPSYGGAQQLNTDENFFRHASLSKWIIDFPIRVGGSNINPWEIVEKSIP 572594
Query: 1331 KQITQLLSASSDQFLIAVLTDDYFNNLNNNGFLTRNPRTNFIQLDAARVLTQINVFNPGG 1390
KQITQLLSASSDQFLI+VLTDD+FNNLN NGFL RNPRTN IQLDA+RVLT I+VFNPGG
Sbjct: 572593 KQITQLLSASSDQFLISVLTDDFFNNLNANGFLIRNPRTNQIQLDASRVLTTIDVFNPGG 572414
Query: 1391 VKFNEQFLKFLTKVYGDPELSYQDSKLTYGIVPVDPQIEETYTYVQGPFGFKETELNPDS 1450
VKFN+ FL F+ KVYGD EL+ QDSKL +GIVPVDP IEETYTYV+GPFGF+E L+ +S
Sbjct: 572413 VKFNDSFLSFMLKVYGDFELAKQDSKLNFGIVPVDPAIEETYTYVEGPFGFQEDNLDENS 572234
Query: 1451 PYTLTGISPDSKFVNLTDSGGNSLRSLISSDSEMNVIVNAGFQYANNTKIGDFIFIQPKN 1510
PYTLTGI+P+S FVNL D GNSLR+LISSD EMNVIVNAGFQYANN IGD+++I+PKN
Sbjct: 572233 PYTLTGINPESSFVNLIDGSGNSLRNLISSDQEMNVIVNAGFQYANNINIGDYVYIKPKN 572054
Query: 1511 TATRYSEKFLKSPPKTPTVKFRVVGVSTDAFGQELYINQNIANRLLKLNGFDGRGVIKDV 1570
TATRYSEKFLK+P TV F+VVGVSTDAFGQELYINQ+IAN LLKL+G GRG+I+DV
Sbjct: 572053 TATRYSEKFLKAPLNNSTVAFKVVGVSTDAFGQELYINQHIANNLLKLSGNQGRGIIRDV 571874
Query: 1571 VK 1572
+K
Sbjct: 571873 IK 571868
Score = 1243 (565.4 bits), Expect = 0.0, Poisson P(2) = 0.0
Identities = 243/296 (82%), Positives = 266/296 (89%), Frame = -2
Query: 935 QDPIQVVASKLKGYLNVPDSDLAFNVKDISKFQYLTTARNYFPDLVQNYLAIASVVIAAF 994
QDP+Q +A++L+GYL+VP SDLAFNVKDISKF YLTTARNYFPDLVQ+YLAI S VIA F
Sbjct: 573751 QDPVQFIANRLEGYLDVPRSDLAFNVKDISKFNYLTTARNYFPDLVQSYLAIVSTVIAIF 573572
Query: 995 LSILALYLTILLIKSFIKKNQTEFSIIRAGGFSTAKFIAGMSVFAGIVALASSFFGVLFA 1054
L ILALYL ILLIKSFIKKNQTEFSIIRAGGFST KFI GMSVFAGIVA+ SSF GVLFA
Sbjct: 573571 LIILALYLIILLIKSFIKKNQTEFSIIRAGGFSTTKFIVGMSVFAGIVAIVSSFLGVLFA 573392
Query: 1055 FLLERQVKGIISRYWFIALPANSFNWISFFGSMLLIFVIFQFISWIAFKQLFSKPVNVLI 1114
FLLE QVKGII+RYWFIALP NSFNW+SFFGS + F +F+FIS IAFKQLFSKPVNVLI
Sbjct: 573391 FLLEGQVKGIINRYWFIALPENSFNWLSFFGSFFITFFVFEFIS*IAFKQLFSKPVNVLI 573212
Query: 1115 DQGNETKFSVFLHLLKRKSYTMTPLGKFRVSLIISRLSRLFTYVGLSSIALLLIGIAGTI 1174
DQGNETKFSV LHLLK KS+TM+PL KFRVSLI+SR SRLFTYVGLSS+ALLLIGIAGTI
Sbjct: 573211 DQGNETKFSVLLHLLKHKSHTMSPLTKFRVSLIVSRFSRLFTYVGLSSVALLLIGIAGTI 573032
Query: 1175 PQKFGAAQSNTVLNRNFNYRLNLQTPTEQSGWYAIQPYSRFGQTDDSLGIKALYKD 1230
PQKF AAQ++T LNRNFNY+LNLQTPTEQSGWYAIQPYS FG TD++ GIK LY +
Sbjct: 573031 PQKFSAAQTSTSLNRNFNYKLNLQTPTEQSGWYAIQPYSHFGVTDNNNGIKTLYNE 572864
Score = 1102 (501.2 bits), Expect = 0.0, Poisson P(3) = 0.0
Identities = 216/286 (75%), Positives = 249/286 (87%), Frame = -2
Query: 1597 STTKDKYKIEYVKPTGYVPFNGVFSKELNPSLVSKALVLNSNIGVWGNFTDFGNNFTNLV 1656
S + D+Y+I+YVKP GYVPFNGVFSKEL PSL++KALVLNS IGVWGNFTDFGNNF NLV
Sbjct: 571852 SQSSDEYEIDYVKPNGYVPFNGVFSKELKPSLLNKALVLNSIIGVWGNFTDFGNNFQNLV 571673
Query: 1657 KGKENKIITSILPSDPDILKQLAKEKGENGVDSMTYENLRKKVIEKYTSEWSSTQSLASG 1716
+ K +K+ITSILP+DP+I+ +LA+EK SM YE+LRK+++ KY +E +S L+
Sbjct: 571672 RNKLDKVITSILPTDPEIINKLAQEKQIINTTSMNYESLRKELVNKYKTE*NSVNLLSQN 571493
Query: 1717 ARGIFGDNIMVPALKLDAAGASAQIIRNNAEVLFNTVNQVDGFLLGTIIPFIFITCVVLG 1776
A IFG+NI+ P L +DAAG SAQIIRNNAEVLFNTVNQVD FLLGTIIPFIFITCVVLG
Sbjct: 571492 ASSIFGNNIIAPVLNIDAAGTSAQIIRNNAEVLFNTVNQVDAFLLGTIIPFIFITCVVLG 571313
Query: 1777 ISMLEEMKRIFISLKSIGYKDSQNLVSLLCFFIPAFVLSLLISIAILAGLLVGVQALVFG 1836
ISMLEEMKRIFISLK+IGY+D QNL+SLL FFIPAFVL+LLISI +LAG+L+G+QA+VF
Sbjct: 571312 ISMLEEMKRIFISLKAIGYRDVQNLISLLTFFIPAFVLALLISIGVLAGVLIGIQAVVFN 571133
Query: 1837 VAQVFLTNVFEFLPYMVGIVLFGATIFVIGSYFWIKLRSAELKEGF 1882
VAQVFLTNVFEFLPYMVGIVLFG TIFVIGSYF IKLRSAELKEGF
Sbjct: 571132 VAQVFLTNVFEFLPYMVGIVLFGVTIFVIGSYF*IKLRSAELKEGF 570995
Score = 936 (425.7 bits), Expect = 0.0, Poisson P(4) = 0.0
Identities = 177/244 (72%), Positives = 205/244 (84%), Frame = -2
Query: 686 SSSSSSTGDTKSTSTKFQIYPKLANILAQAQLPEASSIPDTLTNAIKQWSTLDKKGFEAL 745
++S +T STKF IYPKLANI+AQAQLPEA++IP T +A+KQ + LD GF L
Sbjct: 574495 TASLKNTQALSPKSTKFPIYPKLANIIAQAQLPEATNIPTTALDALKQ*TNLDANGFNNL 574316
Query: 746 DDTGKSKAANNYVALLSYFTPEFQDPNELVVTNRQKLDIPIIFKNGVNPLTLPTDQQSLV 805
+ K KAANNY+ALLSYFTP FQDPNEL+ TNRQ L+IPI KNGVNPL LPTDQQ+LV
Sbjct: 574315 KEEDKRKAANNYLALLSYFTPAFQDPNELIETNRQMLEIPITVKNGVNPLILPTDQQNLV 574136
Query: 806 VQTPEAHGAVVSQQWLFKHDKEVLPLEGEYSWKEALENPKNLPNWLNDLPDKYKFSINGL 865
VQTPEAHGAVVSQQWLF+H+KE+LP EGEY+ K AL+ P N PNWLNDLPD+YKFSINGL
Sbjct: 574135 VQTPEAHGAVVSQQWLFRHNKEILPQEGEYA*KTALQTPNNFPNWLNDLPDRYKFSINGL 573956
Query: 866 TFAILGVGESVETGYPVLSTNSPLPNSQDEGLIFLNEQGYRSVLFAVPAASEENYYAFKS 925
TFAILG+GESVETGYPVLS SPLPN+QDE LIF+N+Q YRS+LFAVPAA++ENYYAFKS
Sbjct: 573955 TFAILGIGESVETGYPVLSLQSPLPNTQDEALIFVNDQAYRSILFAVPAANQENYYAFKS 573776
Query: 926 DDIK 929
D+K
Sbjct: 573775 TDLK 573764
Score = 535 (243.3 bits), Expect = 0.0, Poisson P(5) = 0.0
Identities = 105/193 (54%), Positives = 140/193 (72%), Frame = -2
Query: 269 EPKKDSNVEEQYTTNNKDKVWFKSDETQAGSSSGESETSKLSTSYLFTGGQEAANWFPNL 328
+ ++ +N ++ +T N D+ S +++ + +S +YLFTGG EAAN FPNL
Sbjct: 575635 QKQQTNNDPQKDSTVNSLYKTNNKDKVWFKSDETKADNTDISANYLFTGGNEAAN*FPNL 575456
Query: 329 YANVPIVLPISPGSQFWLETNPFKEIIEVFQKEKEEKEKQSFSLTFTLDTSKLSHLDKEE 388
YAN+PI L I PGSQFW + NPFKEI+E FQ +KE K+ QSF+LTF LD SKL+ LD E+
Sbjct: 575455 YANIPIDLEIDPGSQFWKDVNPFKEIVEEFQTQKESKDNQSFTLTFNLDISKLNKLDNEQ 575276
Query: 389 FDWLEKQAETISSGSSFGDYNLKKKINSLKSFELNINKDWLKNKVKAEKETILDSLPGFS 448
WLE A+TI++ SSFGD +L+ K+ LK FEL INKD LK KV++EK+TIL+SLPGFS
Sbjct: 575275 LKWLETNAKTIANNSSFGD*DLENKLKQLKKFELKINKD*LKKKVESEKDTILNSLPGFS 575096
Query: 449 NSDKNTIFSTQSG 461
+SDK+TIF TQ+G
Sbjct: 575095 DSDKDTIFKTQNG 575057
Score = 436 (198.3 bits), Expect = 2.8e-317, Poisson P(6) = 2.8e-317
Identities = 85/114 (74%), Positives = 100/114 (87%), Frame = -2
Query: 1 MFSFFKQIFKSLKKFFFLLFGIIFVLFSIIFLETSILQLSNNLVNTYTALVQKTNSSDIV 60
MFSFFKQIFKSLKKFFFLLFGIIFVLFSIIFLETSI+QLSNNLV+TYT LV KTNSSDIV
Sbjct: 576343 MFSFFKQIFKSLKKFFFLLFGIIFVLFSIIFLETSIVQLSNNLVSTYTTLVSKTNSSDIV 576164
Query: 61 APAIFKESSPVYKTELKEEKRHFSKIKLTEKKINFIWPYQESDFGSDSEKKDST 114
APAI KE++PVY L + +FSKIK+ +KKIN+++PYQE+DFGSDS + + +
Sbjct: 576163 APAILKEANPVYIASLTNDSGYFSKIKIDDKKINYLFPYQENDFGSDSGQSNGS 576002
Score = 424 (192.9 bits), Expect = 0.0, Poisson P(7) = 0.0
Identities = 83/105 (79%), Positives = 90/105 (85%), Frame = -2
Query: 122 PRKGDVNDKDKLFLARKRGILKAYGEANIAEKRIYKGLAVSFQNTYSFTGTDQESNNLNQ 181
PRKGDVN+KDKLFLARKRGILKAYGEANIAEKRIYKGLAVSF NT SF G+D + N+
Sbjct: 575977 PRKGDVNEKDKLFLARKRGILKAYGEANIAEKRIYKGLAVSFNNTDSFNGSDISDSITNR 575798
Query: 182 NTVSDPQNLIYDKEGNLLGYFVDGLILDGIPLRAGIARFPGDKGK 226
+ +SDPQNLIYD GNLLGYF DGLI + I LRAGIARFPGDKGK
Sbjct: 575797 HIISDPQNLIYDASGNLLGYFADGLIKETISLRAGIARFPGDKGK 575663
Score = 419 (190.6 bits), Expect = 0.0, Poisson P(8) = 0.0
Identities = 82/135 (60%), Positives = 103/135 (76%), Frame = -2
Query: 497 QQQDKQESSADDGVKDPTFSDVQTEFDKIGTENHTPQKNLNNVYAALLHQWKSIFQEDLV 556
Q Q S A +G+ DP FS+VQT ++KI N+TP+K L+ VYAA+L Q +SIFQEDLV
Sbjct: 575005 QLVQNQNSQASNGIADPNFSNVQTAYNKIHQSNNTPEKTLDAVYAAVLDQ*RSIFQEDLV 574826
Query: 557 KKVTALLEKYRDAFLKAKALKELEFSRQNLAIATNVSSEESASFLVSNKDSQKYNDLSII 616
KK LLEKYRD FLKA A +++S+QN+AIA NVSS ESASFLVSNKD Q+YNDLS+I
Sbjct: 574825 KKTVDLLEKYRDHFLKATAFNNIDYSKQNIAIANNVSSAESASFLVSNKDEQRYNDLSLI 574646
Query: 617 EGINFKSWLAKEKSN 631
+G++ KSWL K + N
Sbjct: 574645 DGVDLKSWLFKPEQN 574601
Score = 125 (56.9 bits), Expect = 3.2e-94, Poisson P(9) = 3.2e-94
Identities = 22/53 (41%), Positives = 35/53 (66%), Frame = -2
Query: 627 KEKSNPLDMVYGGKSNSEGFLEKVEYEFKPTQTDEKKKAAAKTTQGTTDSLTQ 679
+ +SNPLD +YGG+ + GFL+K++YEFKP+ + A+ K TQ + T+
Sbjct: 574606 QNESNPLDTIYGGQDANNGFLQKIDYEFKPSTSSGGMTASLKNTQALSPKSTK 574448
Score = 65 (29.6 bits), Expect = 4.2e-23, Poisson P(10) = 4.2e-23
Identities = 13/40 (32%), Positives = 19/40 (47%), Frame = -2
Query: 1230 DKGDQIQQQQQQQQQQGNDKEHPYNLKELKISDRGGNPIK 1269
D + I+ + Q + EHPY LK+ +R PIK
Sbjct: 572899 DNNNGIKTLYNESVQANSQNEHPYKPSNLKLKNRQDQPIK 572780
Score = 53 (24.1 bits), Expect = 0.014, Poisson P(7) = 0.014
Identities = 11/32 (34%), Positives = 15/32 (46%), Frame = -1
Query: 913 PAASEENYYAFKSDDIKAKFPGQDPIQVVASK 944
P A E+N Y D ++A + IQ A K
Sbjct: 390497 PVAEEQNNYQVGFDQVQANLDNNEEIQPTAEK 390402
Parameters:
E = 5.0, S = 54 (24.6 bits), E2 = 0.11, S2 = 36
W = 3, T = 13 (5.9 bits), X = 22 (10.0 bits)
M = BLOSUM62
C = 0 (Standard genetic code)
H = 0, V = 500, B = 250
-gapdecayrate 0.5 (the default)
Statistics:
Lambda = 0.315, Lambda/ln2 = 0.455, K = 0.133, H = 0.538 bits/position
Expected/Observed high score = 56 (25.5 bits) / 1274 (579.5 bits)
# of letters in query: 1882 aa
# of neighborhood words in query: 11,889
# of exact words scoring below T: 132
Database: MGseq
# of letters in database: 580,073 bp
# of word hits against database: 1,111,007
# of failed hit extensions: 980,168
# of successful extensions: 4046
# of overlapping HSPs discarded: 4020
# of HSPs reportable: 26
# of sequences in database: 1
# of db sequences with at least one HSP: 1
No. of states in DFA: 561 (55 KB)
Total size of DFA: 171 KB (192 KB)
Time to generate neighborhood: 0.08u 0.00s 0.08t Real: 00:00:00
No. of processors used: 1
Time to search database: 14.55u 0.08s 14.63t Real: 00:00:46
Total cpu time: 14.76u 0.15s 14.91t Real: 00:00:47