Matthias Seedorf
PhD 1995 Christian-Albrechts University, Kiel, Germany,
Postdoctoral work at the Dana-Farber Cancer Institute, Harvard
Medical School, Boston, USA,
at Zentrum für Molekular Biologie (ZMBH) since 1998.
mRNA Transport and
Protein Localization
- Current Research
Early in the biogenesis of mRNA, starting at transcription, RNA-binding
proteins coat nascent RNAs. At all steps of RNA-metabolism a
pool of these RNA-binding proteins associate with mRNA. Some
proteins not only accompany mRNAs into the cytoplasm but also
control their activities in the cytoplasm including mRNA localization,
mRNA translation, and mRNA turnover.
In order to study the cytoplasmic distribution of RNA-containing
particles, we analyzed the intracellular localization of the
RNA-binding, polysome-associated protein Scp160p. Scp160p-ribosome
complexes accumulate at the endoplasmic reticulum (ER) in a microtubule-dependent
manner. Using affinity-tags and precipitation techniques, we
isolated fractions enriched in Scp160p-bound polysomes and identified
a specific pool of Scp160p-bound mRNAs. In the future, we would
like to localize these mRNAs and we will characterize other components
of the mRNA-targeting machinery. This will help us to understand
how the transport of mRNA and the spatial regulation of translation
contributes to the process of protein sorting and the asymmetric
distribution of proteins within the cell.
Contact:
Dr. Matthias Seedorf
ZMBH, Room 221a
Im Neuenheimer Feld 282
69120 Heidelberg, Germany
Tel: - 49 - 6221 - 54 82 99
Fax: - 49 - 6221 - 54 58 92
email: m.seedorf@zmbh.uni-heidelberg.de
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Projects for a doctoral thesis
1) Scp160p-dependent translation of specific mRNAs. In vitro
quantification of translation efficiencies of Scp160p-bound mRNAs
and identification of factors mediating translational control
of these mRNAs.
2) Study the intracellular dynamics of Scp160p-bound mRNA-particles.
Intracellular localization of RNAs using "green RNA"
technology by expression of fluorescently tagged-RNA transcripts
in living yeast cells.
3) Employing conditional yeast motor- and cytoskeletal-mutants
to study the transport of Scp160p-particles. Characterization
of factors which mediate the targeting and anchoring of Scp160p-bound
polysomes to the ER.
- Selected Publications
Frey, S., Pool, M. and M. Seedorf (submitted to J Biol Chem).
Scp160p, an RNA-binding, polysome-associated protein localizes
to the endoplasmic reticulum of Saccharomyces cerevisiae in a
microtubule-dependent manner.
Chung K.M. et al. (2000). Nonstructural protein 5A of hepatitis
C virus inhibits the function of karypherin beta3. J Virol 74,
5233-5241.
Seedorf, M. et al. (1999). Interactions between a nuclear transporter
and a subset of nuclear pore complex proteins depend on Ran GTPase.
Mol Cell Biol 19, 1547-1557.
Seedorf, M. and P.A. Silver (1997). Importin/karyopherin protein
family members required for mRNA export from the nucleus. Proc
Natl Acad Sci U S A 94, 8590-8595.
Corbett, A. (1996). Genetic analysis of macromolecular transport
across the nuclear envelope. Exp Cell Res 229, 212-216.
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